Software
RosettaDesign: an online server for performing protein design simulations
SwiftLib: on online tool for designing combinatorial libraries from degenerate codons
Ubsrd: a database of ubiquitin family structures and features
Rosetta: macromolecular structure prediction and design (developed by a consortium of over 30 universities in the Rosetta Commons)
PyRosetta: a python interface to Rosetta